Google DeepMind Releases AlphaGenome Atlas

(blog.google)

228 points | by utiiiD 2 hours ago

20 comments

  • jFmDRz73 1 hour ago
    This Google blog post is a distilled version of a Deep Mind blog post:

    https://deepmind.google/blog/alphagenome-atlas-a-predictive-...

    They are only announcing a cache. The origin for the cache is not discussed.

    In particular, the question of whether to trust the predictions is not addressed. For that, I think the citation is from January:

    https://www.nature.com/articles/s41586-025-10014-0

  • leopoldj 1 hour ago
    Videos. [2] is for the scientists to start using AlphaGenome Atlas from AntiGravity.

    1. https://www.youtube.com/watch?v=U0aToL5C-bQ

    2. https://www.youtube.com/watch?v=b2qw3rDNX0Q

  • mchusma 13 minutes ago
    This has Demis written all over it. There is a great video of him with AlphaFold chatting with the team about releasing some results, and he asked something like “what if we just do them all?”

    Very excited to see that happen here.

    • shevy-java 3 minutes ago
      Why are you excited about this?
  • RobotToaster 53 minutes ago
    Can this be used with a 23andMe genome to find pathogenic mutations?
    • dekhn 42 minutes ago
      Not really, no.
      • shevy-java 2 minutes ago
        Why not? There is no logical reason as to why this would not work, IF it works in the first place, which I don't know. In theory the problem space here is finite, so there is of course a way to predict everything. Whether this is the case right now - who knows; I probably don't think it is currently ready. But eventually it will be. And it should not be in the hands of private companies.
  • shevy-java 3 minutes ago
    All controlled by an adCompany.

    That is outright scary. Science is being slurped up here.

  • asxndu 1 hour ago
    I really love Deep Mind, its genuinely focused on using AI to make the world a better place.
    • sssilver 1 hour ago
      Be careful when loving shareholder-driven endeavors; they're a single executive decision away from breaking your heart.
      • mdp2021 1 hour ago
        It's "shareholder-linked" (probably not "driven"), but yes, upvoted. Nonetheless, even when with grave faults in the path, Google has managed to give us marvellous, paramount free resources (Google Street, Google Museum...), and would have given more (Google Books - if the negotiation had succeeded). I am grateful.
        • shevy-java 0 minutes ago
          Why would you be grateful? I don't think any of that should be under private control to begin with.
        • boelboel 47 minutes ago
          Google Streetview/maps isn't even the best mapping/'streetview' tool at this point. Filled with ads and bugs, some major bugs have been there for 10+ years.
          • minimeow 41 minutes ago
            Now I'm curious. What is the better mapping and streetview tool at this point?
      • panarky 1 hour ago
        Be careful when loving government/philanthropy/ngo-driven endeavors; they're a single executive decision away from breaking your heart.
        • LeFantome 48 minutes ago
          Marriages too
          • minimeow 41 minutes ago
            Statistically you are very correct.
    • dgellow 1 hour ago
      No AI company is doing that. There is some benefits but that’s not what any AI for profit will ever focus upon
      • heaney-555 1 hour ago
        DeepMind objectively is doing that. The world is not so black and white as "evil profit-hungry corporations will never do anything good".
        • dgellow 1 hour ago
          I preemptively acknowledged that in my comment…
        • surgical_fire 31 minutes ago
          If Google does anything good for the world it is entirely accidental, and I am certain they will correct this mistake later.
          • godwinson__4-8 23 minutes ago
            Market reward is the best proxy for good we have.

            What's your alternative? Executive fiat? Mob rule?

            Deepmind is objectively good. These endeavors would always cost money. Better private capital than state, no one has to give Google anything. The state is not so generous.

            • almostdeadguy 18 minutes ago
              Mob rule, aka Democracy.
              • rightnutwingjob 2 minutes ago
                Yes, we can just vote ourselves largess from the public purse.
              • godwinson__4-8 4 minutes ago
                Not what democracy is.

                Every single serious theorist of democracy has recognized this.

                Democracy is about rule of law and institutions, not simply the mob.

                Tyranny of the majority is the paramount concern of all democracies. Nevertheless, institutions can fail.

                The idea that democracy always leads to desirable outcomes is evidently false by historical record.

                I just don't understand people who think the state is better than Google. Google pretty much works. Google does not have police powers. Google cant surround your car and point guns at your family. Most of the bad things about Google are actually forced upon them by the state. Who could have even a passing knowledge of history and think states are somehow safer than corporations?

                Take the United States. Should Donald Trump get a say in how to run Google? Maybe you like him, so how about the guy that comes after him, or the next one after that?

                The American mob seems intent on leading their country into the gutter. Without Silicon Valley, America would have already lost its place on the world stage.

                But please lets here more indictments from a population who can't even get the government to agree with them on those areas already under its purview. Now let's set a precedent for even more interference in the market, that way when your party (whatever side you are on) chokes the next future election away the next nut you don't agree with has even more power? Is that your plan?

            • surgical_fire 5 minutes ago
              > Market reward is the best proxy for good we have.

              Only if the goal is profit. All else be damned.

              > What's your alternative? Executive fiat? Mob rule?

              It is always bewildering to me that people see the world being raped by corporations and their negative externality, and they think that this is the pinnacle that humanity can achieve.

              Nothing else can be better, if all your options are "mob rule" or "executive fiat".

              I fancy myself a misanthrope, but damn, next to people in this forum I am probably the last humanist walking through the ruins of civilization.

              > Deepmind is objectively good.

              Google is objectively bad, and the world would be a much nicer place if they ceased to exist.

  • realcul 33 minutes ago
    So I will know which DNAs to change to become a wolverine! yay!
  • bonsai_spool 1 hour ago
    This may not be anything new but it makes using several Google/DeepMind resources a lot less painful.

    I'm comfortable programming but others who also do mol bio may be less so or may not recognize when Claude is going off the rails.

  • wseqyrku 7 minutes ago
    I'm convinced AI labs are absolutely hallucinating with their random names. It doesn't even mean anything anymore. Can we go back to numbers?
  • gavinray 1 hour ago
    Anyone know if you can use an indel VCF file with this?
  • MahiroHirakawa 1 hour ago
    Cool. But is this actually advanced biology, or just making predictions about biology more accurate? Those aren't the same thing.
  • searine 46 minutes ago
    I saw a really interesting talk by Katie Pollard at ISMB this year about the limitations of variant prediction.

    The gist was, can existing variation provide enough context to infer impact of variation? The answer seemed to be no.

    Kind of like how frontier LLMs need to ingest larger and large amounts of text to advance. We are going to need to leverage comparative data from other species, and likely tremendous amounts of laboratory mutagenesis experiments to actually make headway on variant prediction. Nature, as it stands, just doesn't have enough human variation.

    • robwwilliams 7 minutes ago
      Yes, and genetic variant generally do not act in isolation. We currently focus on the small additive effects of variants because we can with small sample sizes—and 1 million humans is marginal using a GWAS cohort to dive into epistasis. But these interaction effects among variants are critical. Now almost completely deprecated.
  • dotinvictim 1 hour ago
    unleash gemini 4 stop saving dario
  • mertcikla 2 hours ago
    not my field so I can't judge how useful it is but assuming this data can be used for drug discovery and their ToS limiting to non-commercial use only. Does DeepMind plan on selling this data to pharmaceutical companies?
    • dekhn 2 hours ago
      Individual SNP predictions are not useful for drug discovery. Pharma might license this, but mainly out of fear of missing out.
    • abirch 1 hour ago
      Probably. I know Google has partnerships with Pharma: https://www.merck.com/news/merck-and-google-cloud-partner-to...
    • falcor84 2 hours ago
      My understanding is that they already are, via Isomorphic Labs
    • bpodgursky 1 hour ago
      It's a bigger deal for diagnostics than for drug development.
    • PunchTornado 2 hours ago
      Hopefully. Tired, as a shareholder, to see the giveaways that deepmind is doing.
      • jakkos 1 hour ago
        Yeah, screw enabling life changing medical research, won't someone please think of the investors' financial returns??
        • PunchTornado 13 minutes ago
          You can do both. Release it, but ask for money.
      • boston_clone 1 hour ago
        Astroturfing, eh? This is verbatim the same comment as another user in this thread. Strange...
        • incognito124 1 hour ago
          PunchTornado was first, fr2029 was second
          • fr2029 1 hour ago
            i made no such comment. reported for harassment.
            • idiotsecant 1 hour ago
              so you just happen to be posting in a thread where some random user said you made a comment but you made no comments whatsoever
            • Larrikin 49 minutes ago
              You deleted the verbatim comment after it was pointed out. One was in thread and one was a stand alone comment. I was curious which was the throwaway so clicked into both profiles
  • orliesaurus 1 hour ago
    the Google DeepMind PR team can't catch a break, shame it makes no sense to me - if someone's in the field maybe they could explain to the rest of us if this is a big deal, just a PR move, or nah?
    • dgellow 1 hour ago
      Just wait a few months, if it is a big deal that will likely be obvious by then
    • dyauspitr 1 hour ago
      What are you even talking about? What do you mean catch a break? They’ve made massive contributions over the last decade.
      • DroneBetter 1 hour ago
        I think orliesaurus meant the PR team is unable to rest because the rest of Deepmind is so prolific and keep coming out with new things for them to announce
        • dyauspitr 22 minutes ago
          I don’t think so. The tone of the comment seems derogatory.
  • WarmWash 1 hour ago
    Google doing work to uncover the pandoras box of genetics? How long before they shove this under the rug...
  • parasxos 2 hours ago
    An atlas of the human genome from the company whose other atlas still routes me into a lake.